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Upgrade from OJS 2.4.7 to 3.0.1 fails

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@Oberdan wrote:

Hello all,

For some days now I'm trying to do a test upgrade on our OJS. Several minor problems like convert file extensions to lower case, empty date fields, and articles with no section_id were already corrected, but I'm still getting the error:

[code: Installer Installer::convertSupplementaryFiles]
PHP Warning:  assert(): Assertion failed in /ojs_temp/rc-3.0.1/lib/pkp/classes/submission/PKPSubmissionFileDAO.inc.php on line 380
PHP Stack trace:
PHP   1. {main}() /ojs_temp/rc-3.0.1/tools/upgrade.php:0
PHP   2. UpgradeTool->execute() /ojs_temp/rc-3.0.1/tools/upgrade.php:34
PHP   3. UpgradeTool->upgrade() /ojs_temp/rc-3.0.1/lib/pkp/classes/cliTool/UpgradeTool.inc.php:64
PHP   4. Installer->execute() /ojs_temp/rc-3.0.1/lib/pkp/classes/cliTool/UpgradeTool.inc.php:88
PHP   5. Installer->executeInstaller() /ojs_temp/rc-3.0.1/lib/pkp/classes/install/Installer.inc.php:186
PHP   6. Installer->executeAction() /ojs_temp/rc-3.0.1/lib/pkp/classes/install/Installer.inc.php:265
PHP   7. call_user_func:{/ojs_temp/rc-3.0.1/lib/pkp/classes/install/Installer.inc.php:415}() /ojs_temp/rc-3.0.1/lib/pkp/classes/install/Installer.inc.php:415
PHP   8. Upgrade->convertSupplementaryFiles() /ojs_temp/rc-3.0.1/lib/pkp/classes/install/Installer.inc.php:415
PHP   9. PKPSubmissionFileDAO->updateObject() /ojs_temp/rc-3.0.1/classes/install/Upgrade.inc.php:1267
PHP  10. assert() /ojs_temp/rc-3.0.1/lib/pkp/classes/submission/PKPSubmissionFileDAO.inc.php:380
<h1>There are no readable files in this directory tree. Are safe mode or open_basedir active?</h1>ojs2: There are no readable files in this directory tree. Are safe mode or open_basedir active?

I've added the following to line 379 of PKPSubmissionFileDAO.inc.php:

echo "$previousFilePath -> $targetFilePath".PHP_EOL;

To find out which file is missing, and when I ran the upgrade again I got this:

[code: Installer Installer::convertSupplementaryFiles]
/ojs_temp/rc-3.0.1_files/journals/2//articles/6434/attachment/6434-1-33005-2-13-20120920.docx -> /ojs_temp/rc-3.0.1_files/journals/2//articles/6434/submission/6434-16-33005-2-2-20120920.docx
/ojs_temp/rc-3.0.1_files/journals/2//articles/868/attachment/868-1-3522-1-13-20080125.jpg -> /ojs_temp/rc-3.0.1_files/journals/2//articles/868/submission/868-14-3522-1-2-20080125.jpg
 ->
PHP Warning:  assert(): Assertion failed in /ojs_temp/rc-3.0.1/lib/pkp/classes/submission/PKPSubmissionFileDAO.inc.php on line 380
PHP Stack trace:
PHP   1. {main}() /ojs_temp/rc-3.0.1/tools/upgrade.php:0
PHP   2. UpgradeTool->execute() /ojs_temp/rc-3.0.1/tools/upgrade.php:34
PHP   3. UpgradeTool->upgrade() /ojs_temp/rc-3.0.1/lib/pkp/classes/cliTool/UpgradeTool.inc.php:64
PHP   4. Installer->execute() /ojs_temp/rc-3.0.1/lib/pkp/classes/cliTool/UpgradeTool.inc.php:88
PHP   5. Installer->executeInstaller() /ojs_temp/rc-3.0.1/lib/pkp/classes/install/Installer.inc.php:186
PHP   6. Installer->executeAction() /ojs_temp/rc-3.0.1/lib/pkp/classes/install/Installer.inc.php:265
PHP   7. call_user_func:{/ojs_temp/rc-3.0.1/lib/pkp/classes/install/Installer.inc.php:415}() /ojs_temp/rc-3.0.1/lib/pkp/classes/install/Installer.inc.php:415
PHP   8. Upgrade->convertSupplementaryFiles() /ojs_temp/rc-3.0.1/lib/pkp/classes/install/Installer.inc.php:415
PHP   9. PKPSubmissionFileDAO->updateObject() /ojs_temp/rc-3.0.1/classes/install/Upgrade.inc.php:1267
PHP  10. assert() /ojs_temp/rc-3.0.1/lib/pkp/classes/submission/PKPSubmissionFileDAO.inc.php:380
<h1>There are no readable files in this directory tree. Are safe mode or open_basedir active?</h1>ojs2: There are no readable files in this directory tree. Are safe mode or open_basedir active?

It seems that an empty file name is being passed here, but I was not able to find where the problem is. Our OJS is old and have indeed some missing files due to a hard disk crash on the server some years ago.

We are using:

Ubuntu 16.04.1 LTS
PHP 5.6.27-1+deb.sury.org~xenial+1
mysql Ver 14.14 Distrib 5.7.16
OJS 2.4.7-1

Any help is appreciated. Thanks!

Oberdan

Posts: 3

Participants: 2

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